GoFish
A modular agent-based modeling library for migratory fish and sediment-bound contaminant risk. Reusable components support transparent, reproducible models that can transfer across estuarine systems.
PREVIOUS PROJECTS / SELECTED SOFTWARE & TOOLS
Science you can
put your hands on.
Models to investigate. Dashboards to explore. Tools to build on. A selection of my individual and collaborative work across ecological research, decision support, and learning.
11 products 05 collections
COLLECTION 01 / EXPOSURE & ECOLOGY
Following the fish.
Understanding the risk.
Three connected ways to explore how estuarine conditions and fish behavior shape contaminant exposure: an interactive explorer, a reusable toolkit, and a coupled model.
Mercury Risk Explorer
Explore how mercury exposure risk emerges in estuaries. This interactive decision-support platform brings material transport, habitat availability, and migration behavior together in one place.
Penobscot Mercury
Exposure Model
P-MEM couples hydrodynamic and ecological modeling to quantify mercury exposure for anadromous fish, connecting physical processes with fish ecology in the Penobscot estuary.
COLLECTION 02 / FISHERIES & RESTORATION
A fishery.
Many connected questions.
Related tools for river herring ecological modeling, migration, and life-stage habitat suitability, including work supporting the Aquinnah herring fishery.
River Herring
Ecological Modeling Dashboard
A public dashboard that brings river herring ecological modeling into an interactive interface for exploration.
River Herring
Migration Model
A migration model for the Aquinnah herring fishery, integrating hydrodynamics, fish energetics, behavior, and habitat to evaluate management alternatives.
River Herring
Habitat Model
Life-stage-specific habitat modeling for alewife and blueback herring. A framework for investigating habitat limitations and restoration tradeoffs.
COLLECTION 03 / FLOW & AUTOMATION
Beneath the river.
Inside the workflow.
Scientific software for modeling the exchange of water between rivers and the sediments beneath them.
HyporheicFloPy
Automated hyporheic hydraulics modeling in rivers using Python. Developed with USACE WRISES to support groundwater-flow and particle-tracking workflows.
COLLECTION 04 / KNOWLEDGE & PRACTICE
Better tools.
Shared understanding.
Resources that help researchers organize knowledge, collaborate, and make their work reproducible.
ITEK Vault
An AI-assisted literature synthesis tool for locating and organizing documented Indigenous Traditional Ecological Knowledge frameworks to support restoration planning and project development.
Role: co-developer
GitHub Skill-Building Tutorials
Practical training for students and researchers in version control and reproducible research workflows. An open resource for building collaborative software skills.
Personal Website Design
A tutorial for designing a personal website to introduce yourself and share your work online.
COLLECTION 05 / LARGE-SCALE MODELING TOOLS & FRAMEWORKS
Regional systems.
Connected outcomes.
Applied ecological modeling tools and frameworks for exploring environmental change and supporting decisions across large regional systems.
New York Bight
Ecological Model
NYBEM connects changing hydrodynamic conditions with habitat quantity and quality across six ecosystem types. An applied regional framework for assessing ecological effects of coastal storm risk management measures in the New York Bight.
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